VirusVariantsWgsDailyIncomingData Schema

https://covid19.admin.ch#/definitions/VirusVariantsWgsDailyIncomingData

Identified virus variants and sequencing results.

Two different data sources are available ('data_source' property):

msys - Targeted investigation of individual mutations or partial or complete sequencing of the genome reported from diagnostic laboratories via the mandatory declaration system. Data is mainly collected in the context of containment measures and is thus not representative.

wgs - Identified virus variants and sequencing results from the genomic surveillance program. The genomic surveillance results are based on whole genome sequencing of SARS-CoV-2. A representative sample of all positive cases is sequenced (aim: 2000 samples/week) to have an overview of currently circulating virus variants and to estimate the proportion of individual variants. Not all laboratories participating in the program are technically connected for now, therefore the cantonal data is not representative. Only data for CHFL is published.

Abstract Extensible Status Identifiable Custom Properties Additional Properties Access Restrictions Defined In
Can be instantiated No Unknown status No Forbidden Allowed none sources.schema.json*

VirusVariantsWgsDailyIncomingData Type

object (VirusVariantsWgsDailyIncomingData)

VirusVariantsWgsDailyIncomingData Properties

Property Type Required Nullable Defined by
classification string Optional cannot be null COVID-19 Dashboard Source Data
data_source string Optional cannot be null COVID-19 Dashboard Source Data
date string Optional cannot be null COVID-19 Dashboard Source Data
entries number Optional cannot be null COVID-19 Dashboard Source Data
freq number Optional cannot be null COVID-19 Dashboard Source Data
geoRegion string Optional cannot be null COVID-19 Dashboard Source Data
prct number Optional cannot be null COVID-19 Dashboard Source Data
prct_lower_ci number Optional cannot be null COVID-19 Dashboard Source Data
prct_mean7d number Optional cannot be null COVID-19 Dashboard Source Data
prct_upper_ci number Optional cannot be null COVID-19 Dashboard Source Data
sumTotal number Optional cannot be null COVID-19 Dashboard Source Data
timeframe_all boolean Optional cannot be null COVID-19 Dashboard Source Data
type string Optional cannot be null COVID-19 Dashboard Source Data
variant_type string Optional cannot be null COVID-19 Dashboard Source Data
version string Optional cannot be null COVID-19 Dashboard Source Data

classification

Classification of the variant_type

default - default classification of all virus variants

classification

classification Type

string (classification)

classification Constraints

enum: the value of this property must be equal to one of the following values:

Value Explanation
"default"

data_source

Data source for these records.

msys - Targeted investigation of individual mutations or partial or complete sequencing of the genome reported from diagnostic laboratories via the mandatory declaration system. Data is mainly collected in the context of containment measures and is thus not representative.

wgs - Identified virus variants and sequencing results from the genomic surveillance program. The genomic surveillance results are based on whole genome sequencing of SARS-CoV-2. A representative sample of all positive cases is sequenced (aim: 2000 samples/week) to have an overview of currently circulating virus variants and to estimate the proportion of individual variants. Not all laboratories participating in the program are technically connected for now, therefore the cantonal data is not representative. Only data for CHFL is published.

data_source

data_source Type

string (data_source)

data_source Constraints

enum: the value of this property must be equal to one of the following values:

Value Explanation
"msys"
"wgs"

date

Date of the provided data.

Formatted as ISO-Date 2020-10-12

date

date Type

string (date)

entries

Absolute number of occurrences for this day.

entries

entries Type

number (entries)

freq

Estimated percentage of the current virus variant for this day (values: 0-1).

freq

freq Type

number (freq)

geoRegion

Geographical unit of the data records.

May be either one of the top level Units CHFL, CH or FL for aggregated record sets or the canton of residence when available or the administrative canton i.e. the canton in which the case was diagnosed (if the place of residence is unknown or if the patient lives abroad).

geoRegion

geoRegion Type

string (GeoUnit)

geoRegion Constraints

enum: the value of this property must be equal to one of the following values:

Value Explanation
"AG"
"AI"
"AR"
"BE"
"BL"
"BS"
"CH"
"CH01"
"CH02"
"CH03"
"CH04"
"CH05"
"CH06"
"CH07"
"CHFL"
"FL"
"FR"
"GE"
"GL"
"GR"
"JU"
"LU"
"NE"
"NW"
"OW"
"SG"
"SH"
"SO"
"SZ"
"TG"
"TI"
"UR"
"VD"
"VS"
"ZG"
"ZH"

prct

Estimated percentage of the current virus variant for this day (values: 0-100).

prct

prct Type

number (prct)

prct_lower_ci

The daily 95 % binomial proportion confidence interval of the 'prct' value was estimated with the Clopper and Pearson (1934) method. prct_lower_ci represents the lower daily boundary.

prct_lower_ci

prct_lower_ci Type

number (prct_lower_ci)

prct_mean7d

Rolling 7 day average of the estimated percentage of the current virus variant for this day.

prct_mean7d

prct_mean7d Type

number (prct_mean7d)

prct_upper_ci

The daily 95 % binomial proportion confidence interval of the 'prct' value was estimated with the Clopper and Pearson (1934) method. prct_upper_ci represents the upper daily boundary.

prct_upper_ci

prct_upper_ci Type

number (prct_upper_ci)

sumTotal

Sum of the 'entries' values.

sumTotal

sumTotal Type

number (sumTotal)

timeframe_all

Indicator if the record belongs to the timeframe for all available data.

timeframe_all

timeframe_all Type

boolean (timeframe_all)

type

COVID19VirusVariants - identified virus variants and sequencing results

type

type Type

string (type)

type Constraints

enum: the value of this property must be equal to one of the following values:

Value Explanation
"COVID19VirusVariants"

variant_type

Virus variant types.

B.1.1.7 - All sequencing results identifying the variant B.1.1.7 (501Y.V1)
B.1.351 - All sequencing results test identifying the variant B.1.351 (501Y.V2)
B.1.525 - All sequencing results test identifying the variant B.1.525
B.1.526 - All sequencing results test identifying the variant B.1.526
B.1.617.1 - All sequencing results test identifying the variant B.1.617.1
B.1.617.2 - All sequencing results test identifying the variant B.1.617.2
P.1 - All cases with a positive test identifying the variant P.1 (501Y.V3)
P.2 - All cases with a positive test identifying the variant P.2
other_lineages - All other lineages, not specifically monitored.
all_sequenced - Sum of all sequencing results. Indicates how many samples were analyzed (per day/in total)

variant_type

variant_type Type

string (VirusVariantWgsType)

variant_type Constraints

enum: the value of this property must be equal to one of the following values:

Value Explanation
"B.1.1.7"
"B.1.1.7 & E484K"
"B.1.351"
"B.1.525"
"B.1.526"
"B.1.617.1"
"B.1.617.2"
"P.1"
"P.2"
"all_sequenced"
"other_lineages"

version

Timestamp of data processing.

format YYYY-MM-DD_HH-mm-SS

version

version Type

string (version)